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VIMS 2016 Journal Articles

A list of the 123 journal articles authored or co-authored by researchers at the Virginia Institute of Marine Science during 2016, as compiled by Thomson Reuters' Web of Science©.

  1. Abelson, A., B. S. Halpern, D. C. Reed, R. J. Orth, G. A. Kendrick, M. W. Beck, J. Belmaker, G. Krause, G. J. Edgar, L. Airoldi, E. Brokovich, R. France, N. Shashar, A. De Blaeij, N. Stambler, P. Salameh, M. Shechter and P. A. Nelson (2016). "Upgrading Marine Ecosystem Restoration Using Ecological-Social Concepts." Bioscience 66(2): 156-163.
  2. Beck, A. J., A. A. Kellum, J. L. Luek and M. A. Cochran (2016). "Chemical Flux Associated with Spatially and Temporally Variable Submarine Groundwater Discharge, and Chemical Modification in the Subterranean Estuary at Gloucester Point, VA (USA)." Estuaries and Coasts 39(1): 1-12.
  3. Beckensteiner, J., D. M. Kaplan, W. M. Potts, C. V. Santos and M. R. O'Farrell (2016). "Data-Limited Population-Status Evaluation of Two Coastal Fishes in Southern Angola Using Recreational Catch Length-Frequency Data." Plos One 11(2).
  4. Bilkovic, D. M., M. Mitchell, P. Mason and K. Duhring (2016). "The Role of Living Shorelines as Estuarine Habitat Conservation Strategies." Coastal Management 44(3): 161-174.
  5. Blake, R. E. and J. E. Duffy (2016). "Influence of environmental stressors and grazer immigration on ecosystem properties of an experimental eelgrass community." Journal of Experimental Marine Biology and Ecology 480: 45-53.
  6. Boon, J. D. and M. Mitchell (2016). "Reply to: Houston, JR, 2016. Discussion of: Boon, JD and Mitchell, M., 2015. Nonlinear Change in Sea Level Observed at North American Tide Stations, Journal of Coastal Research, 31(6), 1295-1305. Journal of Coastal Research, 32(4), 983-987." Journal of Coastal Research 32(4): 988-991.
  7. Buchheister, A. and R. J. Latour (2016). "Dynamic trophic linkages in a large estuarine system - support for supply-driven dietary changes using delta generalized additive mixed models." Canadian Journal of Fisheries and Aquatic Sciences 73(1): 5-17.
  8. Buchheister, A., T. J. Miller, E. D. Houde, D. H. Secor and R. J. Latour (2016). "Spatial and temporal dynamics of Atlantic menhaden (Brevoortia tyrannus) recruitment in the Northwest Atlantic Ocean." Ices Journal of Marine Science 73(4): 1147-1159.
  9. Burge, C. A., C. J. Closek, C. S. Friedman, M. L. Groner, C. M. Jenkins, A. Shore-Maggiok and J. E. Welsh (2016). "The Use of Filter-feeders to Manage Disease in a Changing World." Integrative and Comparative Biology 56(4): 573-587.
  10. Burreson, E. M. (2016). "A New Deep-Sea Fish Leech (Hirudinida: Piscicolidae) from the North East Pacific Ocean." Comparative Parasitology 83(1): 88-91.
  11. Cahill, B., J. Wilkin, K. Fennel, D. Vandemark and M. A. M. Friedrichs (2016). "Interannual and seasonal variabilities in air-sea CO2 fluxes along the US eastern continental shelf and their sensitivity to increasing air temperatures and variable winds." Journal of Geophysical Research-Biogeosciences 121(2): 295-311.
  12. Callam, B. R., S. K. Allen and A. Frank-Lawale (2016). "Genetic and environmental influence on triploid Crassostrea virginica grown in Chesapeake Bay: Growth." Aquaculture 452: 97-106.
  13. Canuel, E. A. and A. K. Hardison (2016). "Sources, Ages, and Alteration of Organic Matter in Estuaries." Annual Review of Marine Science, Vol 8 8: 409-434.
  14. Carnegie, R. B., I. Arzul and D. Bushek (2016). "Managing marine mollusc diseases in the context of regional and international commerce: policy issues and emerging concerns." Philosophical Transactions of the Royal Society B-Biological Sciences 371(1689).
  15. Clardy, T. R. and E. J. Hilton (2016). "Osteology of the prickleback genus Xiphister (Cottiformes: Zoarcoidei: Stichaeidae)." Acta Zoologica 97(2): 211-231.
  16. Colden, A. M., K. A. Fall, G. M. Cartwright and C. T. Friedrichs (2016). "Sediment Suspension and Deposition Across Restored Oyster Reefs of Varying Orientation to Flow: Implications for Restoration." Estuaries and Coasts 39(5): 1435-1448.
  17. Conroy, B. J., D. K. Steinberg, M. R. Stukel, J. I. Goes and V. J. Coles (2016). "Meso- and microzooplankton grazing in the Amazon River plume and western tropical North Atlantic." Limnology and Oceanography 61(3): 825-840.
  18. Crear, D. P., D. D. Lawson, J. A. Seminoff, T. Eguchi, R. A. LeRoux and C. G. Lowe (2016). "Seasonal shifts in the movement and distribution of green sea turtles Chelonia mydas in response to anthropogenically altered water temperatures." Marine Ecology Progress Series 548: 219-232.
  19. Daane, J. M., N. Rohner, P. Konstantinidis, S. Djuranovic and M. P. Harris (2016). "Parallelism and Epistasis in Skeletal Evolution Identified through Use of Phylogenomic Mapping Strategies." Molecular Biology and Evolution 33(1): 162-173.
  20. de Sousa, J. T., S. K. Allen, H. Baker and J. L. Matt (2016). "Aneuploid progeny of the American oyster, Crassostrea virginica, produced by tetraploid x diploid crosses: another example of chromosome instability in polyploid oysters." Genome 59(5): 327-338.
  21. Deary, A. L. and E. J. Hilton (2016). "Comparative Ontogeny of the Feeding Apparatus of Sympatric Drums (Perciformes: Sciaenidae) in the Chesapeake Bay." Journal of Morphology 277(2): 183-195.
  22. Deshpande, A. D., R. M. Dickhut, B. W. Dockum, R. W. Brill and C. Farrington (2016). "Polychlorinated biphenyls and organochlorine pesticides as intrinsic tracer tags of foraging grounds of bluefin tuna in the northwest Atlantic Ocean." Marine Pollution Bulletin 105(1): 265-276.
  23. Du, J. B. and J. Shen (2016). "Water residence time in Chesapeake Bay for 1980-2012." Journal of Marine Systems 164: 101-111.
  24. Duffy, J. E., J. S. Lefcheck, R. D. Stuart-Smith, S. A. Navarrete and G. J. Edgar (2016). "Biodiversity enhances reef fish biomass and resistance to climate change." Proceedings of the National Academy of Sciences of the United States of America 113(22): 6230-6235.
  25. Epelboin, Y., L. Quintric, E. Guevelou, P. Boudry, V. Pichereau and C. Corporeau (2016). "The Kinome of Pacific Oyster Crassostrea gigas, Its Expression during Development and in Response to Environmental Factors." Plos One 11(5).
  26. Freitag, A. (2016). "A typology for strategies to connect citizen science and management." Environmental Monitoring and Assessment 188(9).
  27. Gaither, M. R., B. Violi, H. W. I. Gray, F. Neat, J. C. Drazen, R. D. Grubbs, A. Roa-Varon, T. Sutton and A. R. Hoelzel (2016). "Depth as a driver of evolution in the deep sea: Insights from grenadiers (Gadiformes: Macrouridae) of the genus Coryphaenoides." Molecular Phylogenetics and Evolution 104: 73-82.
  28. Ganju, N. K., M. J. Brush, B. Rashleigh, A. L. Aretxabaleta, P. del Barrio, J. S. Grear, L. A. Harris, S. J. Lake, G. McCardell, J. O'Donnell, D. K. Ralston, R. P. Signell, J. M. Testa and J. M. P. Vaudrey (2016). "Progress and Challenges in Coupled Hydrodynamic-Ecological Estuarine Modeling." Estuaries and Coasts 39(2): 311-332.
  29. Garavelli, L., F. Colas, P. Verley, D. M. Kaplan, B. Yannicelli and C. Lett (2016). "Influence of Biological Factors on Connectivity Patterns for Concholepas concholepas (loco) in Chile." Plos One 11(1).
  30. Gleiber, M. R., D. K. Steinberg and O. M. E. Schofield (2016). "Copepod summer grazing and fecal pellet production along theWestern Antarctic Peninsula." Journal of Plankton Research 38(3): 732-750.
  31. Gong, D. L. and R. S. Pickart (2016). "Early summer water mass transformation in the eastern Chukchi Sea." Deep-Sea Research Part Ii-Topical Studies in Oceanography 130: 43-55.
  32. Govers, L. L., W. A. M. in 't Veid, J. P. Meffert, T. J. Bouma, P. C. J. van Rijswick, J. H. T. Heusinkveld, R. J. Orth, M. M. van Katwijk and T. van der Heide (2016). "Marine Phytophthora species can hamper conservation and restoration of vegetated coastal ecosystems." Proceedings of the Royal Society B-Biological Sciences 283(1837).
  33. Groner, M. L., C. A. Burge, C. J. S. Kim, E. Rees, K. L. Van Alstyne, S. Yang, S. Wyllie-Echeverria and C. D. Harvell (2016). "Plant characteristics associated with widespread variation in eelgrass wasting disease." Diseases of Aquatic Organisms 118(2): 159-168.
  34. Groner, M. L., J. Maynard, R. Breyta, R. B. Carnegie, A. Dobson, C. S. Friedman, B. Froelich, M. Garren, F. M. D. Gulland, S. F. Heron, R. T. Noble, C. W. Revie, J. D. Shields, R. Vanderstichel, E. Weil, S. Wyllie-Echeverria and C. D. Harvell (2016). "Managing marine disease emergencies in an era of rapid change." Philosophical Transactions of the Royal Society B-Biological Sciences 371(1689).
  35. Guevelou, E. and S. K. Allen (2016). "Use of Near Infrared Reflectance Spectroscopy (NIRS) for the rapid compositional analysis of di-, tri-, and tetraploid eastern oysters (Crassostrea virginica)." Aquaculture 459: 203-209.
  36. Gurbisz, C., W. M. Kemp, L. P. Sanford and R. J. Orth (2016). "Mechanisms of Storm-Related Loss and Resilience in a Large Submersed Plant Bed." Estuaries and Coasts 39(4): 951-966.
  37. Hale, E. A., I. A. Park, M. T. Fisher, R. A. Wong, M. J. Stangl and J. H. Clark (2016). "Abundance Estimate for and Habitat Use by Early Juvenile Atlantic Sturgeon within the Delaware River Estuary." Transactions of the American Fisheries Society 145(6): 1193-1201.
  38. Hein, C. J., D. M. FitzGerald, L. H. P. de Souza, I. Y. Georgiou, I. V. Buynevich, A. H. D. Klein, J. T. de Menezes, W. J. Cleary and T. L. Scolaro (2016). "Complex coastal change in response to autogenic basin infilling: An example from a sub-tropical Holocene strandplain." Sedimentology 63(6): 1362-1395.
  39. Hein, C. J., G. G. Fitzsimons, D. M. FitzGerald and A. R. Fallon (2016). "Records of Migration and Ebb-Delta Breaching at Historic and Ancient Tidal Inlets along a River-Fed Paraglacial Barrier Island." Journal of Coastal Research: 228-232.
  40. Hilton, E. J. (2016). "Honorary Foreign Members of the American Society of Ichthyologists and Herpetologists." Copeia 104(1): 286-292.
  41. Hilton, E. J., C. B. Dillman, T. Zhang, L. Z. Zhang and P. Zhuang (2016). "The skull of the Chinese sturgeon, Acipenser sinensis (Acipenseridae)." Acta Zoologica 97(4): 419-432.
  42. Horodysky, A. Z., S. J. Cooke, J. E. Graves and R. W. Brill (2016). "Themed Issue Article: Conservation Physiology of Marine Fishes Fisheries conservation on the high seas: linking conservation physiology and fisheries ecology for the management of large pelagic fishes." Conservation Physiology 4.
  43. Hunt, B. P. V., S. Bonnet, H. Berthelot, B. J. Conroy, R. A. Foster and M. Pagano (2016). "Contribution and pathways of diazotroph-derived nitrogen to zooplankton during the VAHINE mesocosm experiment in the oligotrophic New Caledonia lagoon." Biogeosciences 13(10): 3131-3145.
  44. Irby, I. D., M. A. M. Friedrichs, C. T. Friedrichs, A. J. Bever, R. R. Hood, L. W. J. Lanerolle, M. Li, L. Linker, M. E. Scully, K. Sellner, J. Shen, J. Testa, H. Wang, P. Wang and M. Xia (2016). "Challenges associated with modeling low-oxygen waters in Chesapeake Bay: a multiple model comparison." Biogeosciences 13(7): 2011-2028.
  45. Jacob, B., E. V. Stanev and Y. J. Zhang (2016). "Local and remote response of the North Sea dynamics to morphodynamic changes in the Wadden Sea." Ocean Dynamics 66(5): 671-690.
  46. Jeffery, N. W., K. Hultgren, S. T. C. Chak, T. R. Gregory and D. R. Rubenstein (2016). "Patterns of genome size variation in snapping shrimp." Genome 59(6): 393-402.
  47. Jirinec, V., R. E. Isdell and M. Leu (2016). "Prey availability and habitat structure explain breeding space use of a migratory songbird." Condor 118(2): 309-328.
  48. Kennedy, D. A., G. Kurath, I. L. Brito, M. K. Purcell, A. F. Read, J. R. Winton and A. R. Wargo (2016). "Potential drivers of virulence evolution in aquaculture." Evolutionary Applications 9(2): 344-354.
  49. Khairy, M. A., J. L. Luek, R. Dickhut and R. Lohmann (2016). "Levels, sources and chemical fate of persistent organic pollutants in the atmosphere and snow along the western Antarctic Peninsula." Environmental Pollution 216: 304-313.
  50. Kirwan, M. L., S. Temmerman, E. E. Skeehan, G. R. Guntenspergen and S. Fagherazzi (2016). "Overestimation of marsh vulnerability to sea level rise." Nature Climate Change 6(3): 253-260.
  51. Kirwan, M. L., D. C. Walters, W. G. Reay and J. A. Carr (2016). "Sea level driven marsh expansion in a coupled model of marsh erosion and migration." Geophysical Research Letters 43(9): 4366-4373.
  52. Konstantinidis, P., E. J. Hilton and A. C. Matarese (2016). "New records of larval stages of the eel cod genus Muraenolepis Gunther 1880 (Gadiformes: Muraenolepididae) from the western Antarctic Peninsula." Journal of Fish Biology 89(2): 1494-1500.
  53. Kuehl, S. A., C. R. Alexander, N. E. Blair, C. K. Harris, K. M. Marsaglia, A. S. Ogston, A. R. Orpin, J. J. Roering, A. J. Bever, E. L. Bilderback, L. Carter, C. Cerovski-Darriau, L. B. Childress, D. R. Corbett, R. P. Hale, E. L. Leithold, N. Litchfield, J. M. Moriarty, M. J. Page, L. E. R. Pierce, P. Upton and J. P. Walsh (2016). "A source-to-sink perspective of the Waipaoa River margin." Earth-Science Reviews 153: 301-334.
  54. Lancaster, N. A., J. T. Bushey, C. R. Tobias, B. Song and T. M. Vadas (2016). "Impact of chloride on denitrification potential in roadside wetlands." Environmental Pollution 212: 216-223.
  55. Latour, R. J. (2016). "Explaining Patterns of Pelagic Fish Abundance in the Sacramento-San Joaquin Delta." Estuaries and Coasts 39(1): 233-247.
  56. Lefcheck, J. S. (2016). "PIECEWISESEM: Piecewise structural equation modelling in R for ecology, evolution, and systematics." Methods in Ecology and Evolution 7(5): 573-579.
  57. Lefcheck, J. S., S. J. Brandl, P. L. Reynalds, A. R. Smyth and S. T. Meyer (2016). "Extending Rapid Ecosystem Function Assessments to Marine Ecosystems: A Reply to Meyer." Trends in Ecology & Evolution 31(4): 251-253.
  58. Lefcheck, J. S., S. R. Marion, A. V. Lombana and R. J. Orth (2016). "Faunal Communities Are Invariant to Fragmentation in Experimental Seagrass Landscapes." Plos One 11(5).
  59. Leroy, B., C. N. Meynard, C. Bellard and F. Courchamp (2016). "virtualspecies, an R package to generate virtual species distributions." Ecography 39(6): 599-607.
  60. Lynch, E., D. Kaufman, A. S. Sharma, E. Kalnay and K. Ide (2016). "Brief Communication: Breeding vectors in the phase space reconstructed from time series data." Nonlinear Processes in Geophysics 23(3): 137-141.
  61. Mann, R., M. Southworth, R. J. Fisher, J. A. Wesson, A. J. Erskine and T. Leggett (2016). "Oyster Planting Protocols to Deter Losses to Cownose Ray Predation." Journal of Shellfish Research 35(1): 127-136.
  62. Mannino, A., S. R. Signorini, M. G. Novak, J. Wilkin, M. A. M. Friedrichs and R. G. Najjar (2016). "Dissolved organic carbon fluxes in the Middle Atlantic Bight: An integrated approach based on satellite data and ocean model products." Journal of Geophysical Research-Biogeosciences 121(2): 312-336.
  63. Marcek, B. J., M. C. Fabrizio and J. E. Graves (2016). "Short-Term Habitat Use of Juvenile Atlantic Bluefin Tuna." Marine and Coastal Fisheries 8(1): 395-403.
  64. Martinsen, E. S., N. McInerney, H. Brightman, K. Ferebee, T. Walsh, W. J. McShea, T. D. Forrester, L. Ware, P. H. Joyner, S. L. Perkins, E. K. Latch, M. J. Yabsley, J. J. Schall and R. C. Fleischer (2016). "Hidden in plain sight: Cryptic and endemic malaria parasites in North American white-tailed deer (Odocoileus virginianus)." Science Advances 2(2).
  65. Maynard, J., R. van Hooidonk, C. D. Harvell, C. M. Eakin, G. Liu, B. L. Willis, G. J. Williams, M. L. Groner, A. Dobson, S. F. Heron, R. Glenn, K. Reardon and J. D. Shields (2016). "Improving marine disease surveillance through sea temperature monitoring, outlooks and projections." Philosophical Transactions of the Royal Society B-Biological Sciences 371(1689).
  66. McGrath, P. E., E. J. Hilton and J. A. Musick (2016). "Population Demographics of Longnose Gar, Lepisosteus osseus, from the Tidal Rivers of Virginia." Copeia 104(3): 738-745.
  67. McKenney, D. G., G. Kurath and A. R. Wargo (2016). "Characterization of infectious dose and lethal dose of two strains of infectious hematopoietic necrosis virus (IHNV)." Virus Research 214: 80-89.
  68. Miyashita, L. K., J. P. Richardson and J. E. Duffy (2016). "Effects of predator richness and habitat heterogeneity on prey suppression in an estuarine food chain." Marine Ecology Progress Series 559: 13-20.
  69. Monsarrat, S., M. G. Pennino, T. D. Smith, R. R. Reeves, C. N. Meynard, D. M. Kaplan and A. S. L. Rodrigues (2016). "A spatially explicit estimate of the prewhaling abundance of the endangered North Atlantic right whale." Conservation Biology 30(4): 783-791.
  70. Moore, A. F. P. and J. E. Duffy (2016). "Foundation species identity and trophic complexity affect experimental seagrass communities." Marine Ecology Progress Series 556: 105-121.
  71. Moore, J. L., R. N. Lipcius, B. Puckett and S. J. Schreiber (2016). "The demographic consequences of growing older and bigger in oyster populations." Ecological Applications 26(7): 2206-2217.
  72. Murphy, A. E., I. C. Anderson, A. R. Smyth, B. Song and M. W. Luckenbach (2016). "Microbial nitrogen processing in hard clam (Mercenaria mercenaria) aquaculture sediments: the relative importance of denitrification and dissimilatory nitrate reduction to ammonium (DNRA)." Limnology and Oceanography 61(5): 1589-1604.
  73. Murphy, A. E., K. A. Emery, I. C. Anderson, M. L. Pace, M. J. Brush and J. E. Rheuban (2016). "Quantifying the Effects of Commercial Clam Aquaculture on C and N Cycling: an Integrated Ecosystem Approach." Estuaries and Coasts 39(6): 1746-1761.
  74. Nielsen, J., R. B. Hedeholm, J. Heinemeier, P. G. Bushnell, J. S. Christiansen, J. Olsen, C. B. Ramsey, R. W. Brill, M. Simon, K. F. Steffensen and J. F. Steffensen (2016). "Eye lens radiocarbon reveals centuries of longevity in the Greenland shark (Somniosus microcephalus)." Science 353(6300): 702-704.
  75. Nys, L. N., M. C. Fabrizio and T. D. Tuckey (2016). "Multi-decadal variation in size of juvenile Summer Flounder (Paralichthys dentatus) in Chesapeake Bay." Journal of Sea Research 107: 112-120.
  76. Obryk, M. K., P. T. Doran, A. S. Friedlaender, M. N. Gooseff, W. Li, R. M. Morgan-Kiss, J. C. Priscu, O. Schofield, S. E. Stammerjohn, D. K. Steinberg and H. W. Ducklow (2016). "Responses of Antarctic Marine and Freshwater Ecosystems to Changing Ice Conditions." Bioscience 66(10): 864-879.
  77. Omori, K. L., J. M. Hoenig, M. A. Luehring and K. Baier-Lockhart (2016). "Effects of underestimating catch and effort on surplus production models." Fisheries Research 183: 138-145.
  78. Peachey, B. L. and S. K. Allen (2016). "Evaluation of cytochalasin B and 6-dimethylaminopurine for tetraploidy induction in the Eastern oyster, Crassostrea virginica." Aquaculture 450: 199-205.
  79. Pechenik, J. A., O. R. Chaparro, A. Pilnick, M. Karp, M. Acquafredda and R. Burns (2016). "Effects of Embryonic Exposure to Salinity Stress or Hypoxia on Post-metamorphic Growth and Survival of the Polychaete Capitella teleta." Biological Bulletin 231(2): 103-112.
  80. Phillips, R., G. Grelet, A. McMillan, B. Song, B. Weir, T. Palmada and C. Tobias (2016). "Fungal denitrification: Bipolaris sorokiniana exclusively denitrifies inorganic nitrogen in the presence and absence of oxygen." Fems Microbiology Letters 363(4).
  81. Pondell, C. R., A. J. Beck, S. A. Kuehl and E. A. Canuel (2016). "Application of Plutonium Isotopes to the Sediment Geochronology of Coarse-Grained Sediments from Englebright Lake, California (USA)." Aquatic Geochemistry 22(2): 97-115.
  82. Powell, E. N. and R. Mann (2016). "How well do we know the infaunal biomass of the continental shelf?" Continental Shelf Research 115: 27-32.
  83. Powell, E. N., R. Mann, K. A. Ashton-Alcox, Y. Kim and D. Bushek (2016). "The allometry of oysters: spatial and temporal variation in the length-biomass relationships for Crassostrea virginica." Journal of the Marine Biological Association of the United Kingdom 96(5): 1127-1144.
  84. Proestou, D. A., B. T. Vinyard, R. J. Corbett, J. Piesz, S. K. Allen, J. M. Small, C. Li, M. Liu, G. DeBrosse, X. M. Guo, P. Rawson and M. Gomez-Chiarri (2016). "Performance of selectively-bred lines of eastern oyster, Crassostrea virginica, across eastern US estuaries." Aquaculture 464: 17-27.
  85. Ribeiro, F., E. J. Hilton and R. B. Carnegie (2016). "High Prevalence and Potential Impacts of Caligid Ectoparasites on Larval Atlantic Croaker (Micropogonias undulatus) in the Chesapeake Bay." Estuaries and Coasts 39(2): 583-588.
  86. Rick, T. C., L. A. Reeder-Myers, C. A. Hofman, D. Breitburg, R. Lockwood, G. Henkes, L. Kellogg, D. Lowery, M. W. Luckenbach, R. Mann, M. B. Ogburn, M. Southworth, J. Wah, J. Wesson and A. H. Hines (2016). "Millennial-scale sustainability of the Chesapeake Bay Native American oyster fishery." Proceedings of the National Academy of Sciences of the United States of America 113(23): 6568-6573.
  87. Sagarese, S. R., M. G. Frisk, R. M. Cerrato, K. A. Sosebee, J. A. Musick and P. J. Rago (2016). "Diel Variations in Survey Catch Rates and Survey Catchability of Spiny Dogfish and their Pelagic Prey in the Northeast US Continental Shelf Large Marine Ecosystem." Marine and Coastal Fisheries 8(1): 244-262.
  88. Scheld, A. M., D. M. Bilkovic and K. J. Havens (2016). "The Dilemma of Derelict Gear." Scientific Reports 6.
  89. Schlenker, L. S., R. J. Latour, R. W. Brill and J. E. Graves (2016). "Physiological stress and post-release mortality of white marlin (Kajikia albida) caught in the United States recreational fishery." Conservation Physiology 4.
  90. Schloesser, R. W. and M. C. Fabrizio (2016). "Temporal dynamics of condition for estuarine fishes in their nursery habitats." Marine Ecology Progress Series 557: 207-219.
  91. Schmalz, P. J., M. Luehring, J. D. Rose, J. M. Hoenig and M. K. Treml (2016). "Visualizing Trade-Offs between Yield and Spawners per Recruit as an Aid to Decision Making." North American Journal of Fisheries Management 36(1): 1-10.
  92. Schmitt, E. L., M. W. Luckenbach, J. S. Lefcheck and R. J. Orth (2016). "Predator-prey interactions in a restored eelgrass ecosystem: strategies for maximizing success of reintroduced bay scallops (Argopecten irradians)." Restoration Ecology 24(4): 558-565.
  93. Schnell, N. K., P. Konstantinidis and G. D. Johnson (2016). "High-proof Ethanol Fixation of Larval and Juvenile Fishes for Clearing and Double Staining." Copeia 104(3): 617-622.
  94. Schreder, E. D., N. Uding and M. J. La Guardia (2016). "Inhalation a significant exposure route for chlorinated organophosphate flame retardants." Chemosphere 150: 499-504.
  95. Shen, X. T. and J. P. Y. Maa (2016). "Numerical simulations of particle size distributions: Comparison with analytical solutions and kaolinite flocculation experiments." Marine Geology 379: 84-99.
  96. Shen, X. T. and J. P. Y. Maa (2016). "A camera and image processing system for floc size distributions of suspended particles." Marine Geology 376: 132-146.
  97. Shields, E. C. and K. A. Moore (2016). "Effects of sediment and salinity on the growth and competitive abilities of three submersed macrophytes." Aquatic Botany 132: 24-29.
  98. Smits, A. P., D. E. Schindler, J. B. Armstrong, M. T. Brett, J. L. Carter and B. S. Santos (2016). "Thermal constraints on stream consumer responses to a marine resource subsidy." Canadian Journal of Fisheries and Aquatic Sciences 73(11): 1661-1671.
  99. Stoliker, D. L., D. A. Repert, R. L. Smith, B. K. Song, D. R. LeBlanc, T. D. McCobb, C. H. Conaway, S. P. Hyun, D. C. Koh, H. S. Moon and D. B. Kent (2016). "Hydrologic Controls on Nitrogen Cycling Processes and Functional Gene Abundance in Sediments of a Groundwater Flow-Through Lake." Environmental Science & Technology 50(7): 3649-3657.
  100. Stone, J. P. and D. K. Steinberg (2016). "Salp contributions to vertical carbon flux in the Sargasso Sea." Deep-Sea Research Part I-Oceanographic Research Papers 113: 90-100.
  101. Sweetser, P. W. and E. J. Hilton (2016). "Osteology of the crescent gunnel Pholis laeta and the phylogeny of the family Pholidae (Cottiformes, Zoarcoidei)." Journal of Fish Biology 89(3): 1666-1691.
  102. Thaler, A. D. (2016). "Science Blogging The Essential Guide." Science 351(6279): 1271-1271.
  103. Thanassekos, S., R. J. Latour and M. C. Fabrizio (2016). "An individual-based approach to year-class strength estimation." Ices Journal of Marine Science 73(9): 2252-2266.
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