Marine Life & Processes: VIMS Journal Articles

The following list is based on a search of VIMS-authored research articles from Thomson Reuters' Web of Science© using the keyword search terms ecology, biodiversity, harmful algal blooms (HABs), invasive species, or jellyfish. The list excludes oysters, blue crabs, or sea grass as title terms, and is updated at least biannually.

  1. Stone, J.P. and D.K. Steinberg, 2018. Influence of top-down control in the plankton food web on vertical carbon flux: A case study in the Chesapeake Bay. Journal of Experimental Marine Biology and Ecology, 498: p. 16-24. 10.1016/j.jembe.2017.10.008
  2. Seitz, R.D., et al., 2018. Human Influence at the Coast: Upland and Shoreline Stressors Affect Coastal Macrofauna and Are Mediated by Salinity. Estuaries and Coasts, 41: p. S114-S130. 10.1007/s12237-017-0347-6
  3. Prosser, D.J., et al., 2018. Impacts of Coastal Land Use and Shoreline Armoring on Estuarine Ecosystems: an Introduction to a Special Issue. Estuaries and Coasts, 41: p. S2-S18. 10.1007/s12237-017-0331-1
  4. Lynch, P.D., et al., 2018. Abundance trends of highly migratory species in the Atlantic Ocean: accounting for water temperature profiles. Ices Journal of Marine Science, 75(4): p. 1427-1438. 10.1093/icesjms/fsy008
  5. Luellen, D.R., et al., 2018. Assessment of legacy and emerging contaminants in an introduced catfish and implications for the fishery. Environmental Science and Pollution Research, 25(28): p. 28355-28366. 10.1007/s11356-018-2801-9
  6. Lefcheck, J.S., et al., 2018. Long-term nutrient reductions lead to the unprecedented recovery of a temperate coastal region. Proceedings of the National Academy of Sciences of the United States of America, 115(14): p. 3658-3662. 10.1073/pnas.1715798115
  7. Kornis, M.S., et al., 2018. Shoreline Hardening Affects Nekton Biomass, Size Structure, and Taxonomic Diversity in Nearshore Waters, with Responses Mediated by Functional Species Groups. Estuaries and Coasts, 41: p. S159-S179. 10.1007/s12237-017-0214-5
  8. Groner, M.L., et al., 2018. Dermal mycobacteriosis and warming sea surface temperatures are associated with elevated mortality of striped bass in Chesapeake Bay. Ecology and Evolution, 8(18): p. 9384-9397. 10.1002/ece3.4462
  9. Favata, C.A., et al., 2018. Fish assemblage change following the structural restoration of a degraded stream. River Research and Applications, 34(8): p. 927-936. 10.1002/rra.3336
  10. Fabrizio, M.C., et al., 2018. Tidal Habitats Support Large Numbers of Invasive Blue Catfish in a Chesapeake Bay Subestuary. Estuaries and Coasts, 41(3): p. 827-840. 10.1007/s12237-017-0307-1
  11. Dornelas, M., et al., 2018. BioTIME: A database of biodiversity time series for the Anthropocene. Global Ecology and Biogeography, 27(7): p. 760-786. 10.1111/geb.12729
  12. Davenport, T.M., et al., 2018. Living Shorelines Support Nearshore Benthic Communities in Upper and Lower Chesapeake Bay. Estuaries and Coasts, 41: p. S197-S206. 10.1007/s12237-017-0361-8
  13. Clavero, M., et al., 2018. Nowhere to swim to: climate change and conservation of the relict Dades trout Salmo multipunctata in the High Atlas Mountains, Morocco. Oryx, 52(4): p. 627-635. 10.1017/S0030605316001551
  14. Armstrong, C.T., et al., 2018. Impact of nitrogen chemical form on the isotope signature and toxicity of a marine dinoflagellate. Marine Ecology Progress Series, 602: p. 63-76. https://doi.org/10.3354/meps12619
  15. Wilcox, K.R., et al., 2017. Asynchrony among local communities stabilises ecosystem function of metacommunities. Ecology Letters, 20(12): p. 1534-1545. https://doi.org/10.1111/ele.12861
  16. Verissimo, A., et al., 2017. Molecular diversity and distribution of eastern Atlantic and Mediterranean dogfishes Squalus highlight taxonomic issues in the genus. Zoologica Scripta, 46(4): p. 414-428. https://doi.org/10.1111/zsc.12224
  17. Silva, C., et al., 2017. Infection of the lesser spotted dogfish with Proleptus obtusus Dujardin, 1845 (Nematoda: Spirurida) reflects ontogenetic feeding behaviour and seasonal differences in prey availability. Acta Parasitologica, 62(2): p. 471-476. https://doi.org/10.1515/ap-2017-0055
  18. Reynolds, P.L., et al., 2017. Ghost of invasion past: legacy effects on community disassembly following eradication of an invasive ecosystem engineer. Ecosphere, 8(3). ARTN e01711 https://doi.org/10.1002/ecs2.1711
  19. Quattrini, A.M., et al., 2017. Demersal fish assemblages on seamounts and other rugged features in the northeastern Caribbean. Deep-Sea Research Part I-Oceanographic Research Papers, 123: p. 90-104. https://doi.org/10.1016/j.dsr.2017.03.009
  20. Peterson, C.D., et al., 2017. Preliminary recovery of coastal sharks in the south-east United States. Fish and Fisheries, 18(5): p. 845-859. https://doi.org/10.1111/faf.12210
  21. Orth, R.J., et al., 2017. Submersed Aquatic Vegetation in Chesapeake Bay: Sentinel Species in a Changing World. Bioscience, 67(8): p. 698-712. https://doi.org/10.1093/biosci/bix058
  22. Omori, K.L. and R.A. Fisher, 2017. Summer and fall movement of cownose ray, Rhinoptera bonasus, along the east coast of United States observed with pop-up satellite tags. Environmental Biology of Fishes, 100(11): p. 1435-1449. https://doi.org/10.1007/s10641-017-0654-6
  23. Meynard, C.N., et al., 2017. Climate-driven geographic distribution of the desert locust during recession periods: Subspecies' niche differentiation and relative risks under scenarios of climate change. Global Change Biology, 23(11): p. 4739-4749. https://doi.org/10.1111/gcb.13739
  24. Lynch, S.D., et al., 2017. The effects of pop-up satellite archival tags (PSATs) on the metabolic rate and swimming kinematics of juvenile sandbar shark Carcharhinus plumbeus. Fisheries Research, 186: p. 205-215. https://doi.org/10.1016/j.fishres.2016.08.013
  25. Loyal, C.D., R.D. Seitz, and K.E. Knick, 2017. Direct and indirect impacts of shoreline development on shallow-water benthic communities in a depauperate estuarine system. Bulletin of Marine Science, 93(3): p. 715-741. https://doi.org/10.5343/bms.2016.1076
  26. Kornis, M.S., et al., 2017. Linking the Abundance of Estuarine Fish and Crustaceans in Nearshore Waters to Shoreline Hardening and Land Cover. Estuaries and Coasts, 40(5): p. 1464-1486. https://doi.org/10.1007/s12237-017-0213-6
  27. Hobday, A.J., et al., 2017. International collaboration and comparative research on ocean top predators under CLIOTOP. Deep-Sea Research Part Ii-Topical Studies in Oceanography, 140: p. 1-8. https://doi.org/10.1016/j.dsr2.2017.03.008
  28. Glaspie, C.N. and R.D. Seitz, 2017. Role of habitat and predators in maintaining functional diversity of estuarine bivalves. Marine Ecology Progress Series, 570: p. 113-125. https://doi.org/10.3354/meps12103
  29. Deary, A.L., R.J. Latour, and E.J. Hilton, 2017. Niche Partitioning in Early Life History Stage, Estuarine-Dependent Fishes (Sciaenidae). Estuaries and Coasts, 40(6): p. 1757-1770. https://doi.org/10.1007/s12237-017-0248-8
  30. Banha, F., et al., 2017. Forensic reconstruction of Ictalurus punctatus invasion routes using on-line fishermen records. Knowledge and Management of Aquatic Ecosystems, (418). ARTN 56 https://doi.org/10.1051/kmae/2017045
  31. Altieri, A.H., et al., 2017. Tropical dead zones and mass mortalities on coral reefs. Proceedings of the National Academy of Sciences of the United States of America, 114(14): p. 3660-3665. https://doi.org/10.1073/pnas.1621517114
  32. Veran, S., et al., 2016. Modeling spatial expansion of invasive alien species: relative contributions of environmental and anthropogenic factors to the spreading of the harlequin ladybird in France. Ecography, 39(7): p. 665-675. https://doi.org/10.1111/ecog.01389
  33. Vaudo, J.J., et al., 2016. Vertical movements of shortfin mako sharks Isurus oxyrinchus in the western North Atlantic Ocean are strongly influenced by temperature. Marine Ecology Progress Series, 547: p. 163-175. https://doi.org/10.3354/meps11646
  34. Shields, E.C. and K.A. Moore, 2016. Effects of sediment and salinity on the growth and competitive abilities of three submersed macrophytes. Aquatic Botany, 132: p. 24-29. https://doi.org/10.1016/j.aquabot.2016.03.005
  35. Miyashita, L.K., J.P. Richardson, and J.E. Duffy, 2016. Effects of predator richness and habitat heterogeneity on prey suppression in an estuarine food chain. Marine Ecology Progress Series, 559: p. 13-20. https://doi.org/10.3354/meps11893
  36. Lefcheck, J.S., et al., 2016. Extending Rapid Ecosystem Function Assessments to Marine Ecosystems: A Reply to Meyer. Trends in Ecology & Evolution, 31(4): p. 251-253. https://doi.org/10.1016/j.tree.2016.02.002
  37. Lefcheck, J.S., 2016. PIECEWISESEM: Piecewise structural equation modelling in R for ecology, evolution, and systematics. Methods in Ecology and Evolution, 7(5): p. 573-579. https://doi.org/10.1111/2041-210x.12512
  38. Latour, R.J., 2016. Explaining Patterns of Pelagic Fish Abundance in the Sacramento-San Joaquin Delta. Estuaries and Coasts, 39(1): p. 233-247. https://doi.org/10.1007/s12237-015-9968-9
  39. Jirinec, V., R.E. Isdell, and M. Leu, 2016. Prey availability and habitat structure explain breeding space use of a migratory songbird. Condor, 118(2): p. 309-328. https://doi.org/10.1650/Condor-15-140.1
  40. Gurbisz, C., et al., 2016. Mechanisms of Storm-Related Loss and Resilience in a Large Submersed Plant Bed. Estuaries and Coasts, 39(4): p. 951-966. https://doi.org/10.1007/s12237-016-0074-4
  41. Deary, A.L. and E.J. Hilton, 2016. Comparative Ontogeny of the Feeding Apparatus of Sympatric Drums (Perciformes: Sciaenidae) in the Chesapeake Bay. Journal of Morphology, 277(2): p. 183-195. https://doi.org/10.1002/jmor.20488
  42. Walles, B., et al., 2015. Demography of the ecosystem engineer Crassostrea gigas, related to vertical reef accretion and reef persistence. Estuarine Coastal and Shelf Science, 154: p. 224-233. http://doi.org/10.1016/j.ecss.2015.01.006
  43. Lefcheck, J.S., V.A.G. Bastazini, and J.N. Griffin, 2015. Choosing and using multiple traits in functional diversity research. Environmental Conservation, 42(2): p. 104-107. http://doi.org/10.1017/S0376892914000307
  44. Isdell, R.E., et al., 2015. Effects of terrestrial-aquatic connectivity on an estuarine turtle. Diversity and Distributions, 21(6): p. 643-653. http://doi.org/10.1111/ddi.12289
  45. Guilhaumon, F., et al., 2015. Representing taxonomic, phylogenetic and functional diversity: new challenges for Mediterranean marine-protected areas. Diversity and Distributions, 21(2): p. 175-187. http://doi.org/10.1111/ddi.12280
  46. Granger, V., et al., 2015. Large-scale spatio-temporal monitoring highlights hotspots of demersal fish diversity in the Mediterranean Sea. Progress in Oceanography, 130: p. 65-74. http://doi.org/10.1016/j.pocean.2014.10.002
  47. Granger, V., et al., 2015. Mapping diversity indices: not a trivial issue. Methods in Ecology and Evolution, 6(6): p. 688-696. http://doi.org/10.1111/2041-210x.12357
  48. Gillett, D.J., et al., 2015. Effect of ecological group classification schemes on performance of the AMBI benthic index in US coastal waters. Ecological Indicators, 50: p. 99-107. http://doi.org/10.1016/j.ecolind.2014.11.005
  49. Del Raye, G. and K.C. Weng, 2015. An aerobic scope-based habitat suitability index for predicting the effects of multi-dimensional climate change stressors on marine teleosts. Deep-Sea Research Part Ii-Topical Studies in Oceanography, 113: p. 280-290. http://doi.org/10.1016/j.dsr2.2015.01.014
  50. Buchheister, A. and R.J. Latour, 2015. Diets and trophic-guild structure of a diverse fish assemblage in Chesapeake Bay, USA. Journal of Fish Biology, 86(3): p. 967-992. http://doi.org/10.1111/jfb.12621
  51. Sweetman, C.J., et al., 2014. Diet composition of Bathylagus euryops (Osmeriformes: Bathylagidae) along the northern Mid-Atlantic Ridge. Deep-Sea Research Part I-Oceanographic Research Papers, 92: p. 107-114. http://doi.org/10.1016/j.dsr.2014.06.010
  52. Stone, J.P. and D.K. Steinberg, 2014. Long-term time-series study of salp population dynamics in the Sargasso Sea. Marine Ecology Progress Series, 510: p. 111-127. http://doi.org/10.3354/meps10985
  53. Sipler, R.E., et al., 2014. Bacteriocidal effects of brevetoxin on natural microbial communities. Harmful Algae, 38: p. 101-109. http://doi.org/10.1016/j.hal.2014.04.009
  54. Seitz, R.D., 2014. Value of coastal habitats for exploited species: introduction to a theme set of articles. Ices Journal of Marine Science, 71(3): p. 636-637. http://doi.org/10.1093/icesjms/fst180
  55. Mulholland, M.R., et al., 2014. Contribution of diazotrophy to nitrogen inputs supporting Karenia brevis blooms in the Gulf of Mexico. Harmful Algae, 38: p. 20-29. http://doi.org/10.1016/j.hal.2014.04.004
  56. Malek, A.J., J.S. Collie, and J. Gartland, 2014. Fine-scale spatial patterns in the demersal fish and invertebrate community in a northwest Atlantic ecosystem. Estuarine Coastal and Shelf Science, 147: p. 1-10. http://doi.org/10.1016/j.ecss.2014.05.028
  57. Lefcheck, J.S., et al., 2014. Epifaunal invertebrates as predators of juvenile bay scallops (Argopecten irradians). Journal of Experimental Marine Biology and Ecology, 454: p. 18-25. http://doi.org/10.1016/j.jembe.2014.01.014
  58. Lefcheck, J.S., et al., 2014. Dimensions of biodiversity in Chesapeake Bay demersal fishes: patterns and drivers through space and time. Ecosphere, 5(2). http://doi.org/10.1890/Es13-00284.1
  59. Lawless, A.S. and R.D. Seitz, 2014. Effects of shoreline stabilization and environmental variables on benthic infaunal communities in the Lynnhaven River System of Chesapeake Bay. Journal of Experimental Marine Biology and Ecology, 457: p. 41-50. http://doi.org/10.1016/j.jembe.2014.03.010
  60. Kennish, M.J., M.J. Brush, and K.A. Moore, 2014. Drivers of Change in Shallow Coastal Photic Systems: An Introduction to a Special Issue. Estuaries and Coasts, 37(1): p. S3-S19. http://doi.org/10.1007/s12237-014-9779-4
  61. Heil, C.A., et al., 2014. Blooms of Karenia brevis (Davis) G. Hansen & O. Moestrup on the West Florida Shelf: Nutrient sources and potential management strategies based on a multi-year regional study. Harmful Algae, 38: p. 127-140. http://doi.org/10.1016/j.hal.2014.07.016
  62. Fabrizio, M.C., J.P. Manderson, and J.P. Pessutti, 2014. Home range and seasonal movements of Black Sea Bass (Centropristis striata) during their inshore residency at a reef in the mid-Atlantic Bight. Fishery Bulletin, 112(1): p. 82-97.
  63. Dulvy, N.K., et al., 2014. Extinction risk and conservation of the world's sharks and rays. Elife, 3. ARTN e00590 http://doi.org/10.7554/eLife.00590
  64. Dolan, T.W., M.J. Butler, and J.D. Shields, 2014. Host behavior alters spiny lobster-viral disease dynamics: a simulation study. Ecology, 95(8): p. 2346-2361.
  65. Bronk, D.A., et al., 2014. Nitrogen uptake and regeneration (ammonium regeneration, nitrification and photoproduction) in waters of the West Florida Shelf prone to blooms of Karenia brevis. Harmful Algae, 38: p. 50-62. http://doi.org/10.1016/j.hal.2014.04.007
  66. Bird, T.J., et al., 2014. Statistical solutions for error and bias in global citizen science datasets. Biological Conservation, 173: p. 144-154. http://doi.org/10.1016/j.biocon.2013.07.037
  67. Sturdivant, S.K., R.D. Seitz, and R.J. Diaz, 2013. Effects of seasonal hypoxia on macrobenthic production and function in the Rappahannock River, Virginia, USA. Marine Ecology Progress Series, 490: p. 53-68. http://doi.org/10.3354/Meps10470
  68. Stuart-Smith, R.D., et al., 2013. Integrating abundance and functional traits reveals new global hotspots of fish diversity. Nature, 501(7468): p. 539-+. http://doi.org/10.1038/Nature12529
  69. Sipler, R.E., et al., 2013. Trichodesmium-derived dissolved organic matter is a source of nitrogen capable of supporting the growth of toxic red tide Karenia brevis. Marine Ecology Progress Series, 483: p. 31-45. http://doi.org/10.3354/Meps10258
  70. Silva, N.J., K.W. Tang, and R.M. Lopes, 2013. Effects of microalgal exudates and intact cells on subtropical marine zooplankton. Journal of Plankton Research, 35(4): p. 855-865. http://doi.org/10.1093/Plankt/Fbt026
  71. Shields, J.D., 2013. Complex etiologies of emerging diseases in lobsters (Homarus americanus) from Long Island Sound. Canadian Journal of Fisheries and Aquatic Sciences, 70(11): p. 1576-1587. http://doi.org/10.1139/Cjfas-2013-0050
  72. Schab, C.M., et al., 2013. Return of the Native: Historical Comparison of Invasive and Indigenous Crab Populations near the Mouth of Delaware Bay. Journal of Shellfish Research, 32(3): p. 751-758. http://doi.org/10.2983/035.032.0318
  73. Lefcheck, J.S., et al., 2013. Physiological effects of diet mixing on consumer fitness: a meta-analysis. Ecology, 94(3): p. 565-572.
  74. Howard, J., et al., 2013. Oceans and Marine Resources in a Changing Climate. Oceanography and Marine Biology: An Annual Review, Vol 51, 51: p. 71-192.
  75. Fabrizio, M.C., J.P. Manderson, and J.P. Pessutti, 2013. Habitat associations and dispersal of black sea bass from a mid-Atlantic Bight reef. Marine Ecology Progress Series, 482: p. 241-253. http://doi.org/10.3354/Meps10302
  76. Duffy, J.E., et al., 2013. Decline and Local Extinction of Caribbean Eusocial Shrimp. Plos One, 8(2). DOI 10.1371/journal.pone.0054637
  77. Duffy, J.E., et al., 2013. Envisioning a Marine Biodiversity Observation Network. Bioscience, 63(5): p. 350-361. http://doi.org/10.1525/Bio.2013.63.5.8
  78. Capossela, K.M., M.C. Fabrizio, and R.W. Brill, 2013. Migratory and within-estuary behaviors of adult Summer Flounder (Paralichthys dentatus) in a lagoon system of the southern mid-Atlantic Bight. Fishery Bulletin, 111(2): p. 189-201. http://doi.org/10.7755/Fb.111.2.6
  79. Bilkovic, D.M. and M.M. Mitchell, 2013. Ecological tradeoffs of stabilized salt marshes as a shoreline protection strategy: Effects of artificial structures on macrobenthic assemblages. Ecological Engineering, 61: p. 469-481. http://doi.org/10.1016/j.ecoleng.2013.10.011
  80. Woodland, R.J., et al., 2012. Comparing the nursery role of inner continental shelf and estuarine habitats for temperate marine fishes. Estuarine Coastal and Shelf Science, 99: p. 61-73. http://doi.org/10.1016/J.Ecss.2011.12.019
  81. Steinberg, D.K., M.W. Lomas, and J.S. Cope, 2012. Long-term increase in mesozooplankton biomass in the Sargasso Sea: Linkage to climate and implications for food web dynamics and biogeochemical cycling. Global Biogeochemical Cycles, 26. http://doi.org/10.1029/2010gb004026
  82. Shields, E.C., K.A. Moore, and D.B. Parrish, 2012. Influences of Salinity and Light Availability on Abundance and Distribution of Tidal Freshwater and Oligohaline Submersed Aquatic Vegetation. Estuaries and Coasts, 35(2): p. 515-526. http://doi.org/10.1007/S12237-011-9460-0
  83. Ribeiro, F. and P.M. Leunda, 2012. Non-native fish impacts on Mediterranean freshwater ecosystems: current knowledge and research needs. Fisheries Management and Ecology, 19(2): p. 142-156. http://doi.org/10.1111/J.1365-2400.2011.00842.X
  84. Relles, N.J., D.O.B. Jones, and D.R. Mishra, 2012. Creating Landscape-Scale Maps of Coral Reef Cover for Marine Reserve Management from High-Resolution Multispectral Remote Sensing. Giscience & Remote Sensing, 49(2): p. 251-274. http://doi.org/10.2747/1548-1603.49.2.251
  85. Poore, A.G.B., et al., 2012. Global patterns in the impact of marine herbivores on benthic primary producers. Ecology Letters, 15(8): p. 912-922. http://doi.org/10.1111/J.1461-0248.2012.01804.X
  86. Naeem, S., J.E. Duffy, and E. Zavaleta, 2012. The Functions of Biological Diversity in an Age of Extinction. Science, 336(6087): p. 1401-1406. http://doi.org/10.1126/Science.1215855
  87. Mullineaux, L.S., et al., 2012. Detecting the Influence of Initial Pioneers on Succession at Deep-Sea Vents. Plos One, 7(12). http://doi.org/10.1371/journal.pone.0050015
  88. Lynch, P.D., K.W. Shertzer, and R.J. Latour, 2012. Performance of methods used to estimate indices of abundance for highly migratory species. Fisheries Research, 125: p. 27-39. http://doi.org/10.1016/J.Fishres.2012.02.005
  89. Hultgren, K.M. and J.E. Duffy, 2012. Phylogenetic community ecology and the role of social dominance in sponge-dwelling shrimp. Ecology Letters, 15(7): p. 704-713. http://doi.org/10.1111/J.1461-0248.2012.01788.X
  90. Wu, X.W., et al., 2011. A brown-world cascade in the dung decomposer food web of an alpine meadow: effects of predator interactions and warming. Ecological Monographs, 81(2): p. 313-328.
  91. Tang, K.W., et al., 2011. Metazooplankton community structure, feeding rate estimates, and hydrography in a meltwater-influenced Greenlandic fjord. Marine Ecology-Progress Series, 434: p. 77-99. http://doi.org/10.3354/Meps09188
  92. Sun, S.C., et al., 2011. A brown-world cascade in the dung decomposer food web of an alpine meadow: effects of predator interactions and warming. Ecological Monographs, 81(2): p. 313-328.
  93. Saba, G.K., et al., 2011. The effects of harmful algal species and food concentration on zooplankton grazer production of dissolved organic matter and inorganic nutrients. Harmful Algae, 10(3): p. 291-303. http://doi.org/10.1016/j.hal.2010.11.003
  94. Morse, R.E., et al., 2011. Environmental and Physical Controls on the Formation and Transport of Blooms of the Dinoflagellate Cochlodinium polykrikoides Margalef in the Lower Chesapeake Bay and Its Tributaries. Estuaries and Coasts, 34(5): p. 1006-1025. http://doi.org/10.1007/S12237-011-9398-2
  95. Lynch, P.D., J.E. Graves, and R.J. Latour, 2011. Challenges in the Assessment and Management of Highly Migratory Bycatch Species: A Case Study of the Atlantic Marlins. Sustainable Fisheries: Multi-Level Approaches to a Global Problem: p. 197-225.
  96. Lynch, P.D., M.J. Brush, and R.J. Latour, 2011. Simulated Short-Term Impacts of the Atlantic Menhaden Reduction Fishery on Chesapeake Bay Water Quality. North American Journal of Fisheries Management, 31(1): p. 70-78. http://doi.org/10.1080/02755947.2011.559850
  97. Long, Z.T., J.F. Bruno, and J.E. Duffy, 2011. Food chain length and omnivory determine the stability of a marine subtidal food web. Journal of Animal Ecology, 80(3): p. 586-594. http://doi.org/10.1111/J.1365-2656.2010.01800.X
  98. Fisher, R.A., G.C. Call, and R.D. Grubbs, 2011. Cownose Ray (Rhinoptera Bonasus) Predation Relative to Bivalve Ontogeny. Journal of Shellfish Research, 30(1): p. 187-196. http://doi.org/10.2983/035.030.0126
  99. Filippino, K.C., et al., 2011. The Bioavailability of Effluent-derived Organic Nitrogen along an Estuarine Salinity Gradient. Estuaries and Coasts, 34(2): p. 269-280. http://doi.org/10.1007/s12237-010-9314-1
  100. Condon, R.H., et al., 2011. Jellyfish blooms result in a major microbial respiratory sink of carbon in marine systems. Proceedings of the National Academy of Sciences of the United States of America, 108(25): p. 10225-10230. http://doi.org/10.1073/pnas.1015782108
  101. Cardinale, B.J., et al., 2011. The Functional Role of Producer Diversity in Ecosystems. American Journal of Botany, 98(3): p. 572-592. http://doi.org/10.3732/ajb.1000364
  102. Buchheister, A. and R.J. Latour, 2011. Trophic Ecology of Summer Flounder in Lower Chesapeake Bay Inferred from Stomach Content and Stable Isotope Analyses. Transactions of the American Fisheries Society, 140(5): p. 1240-1254. http://doi.org/10.1080/00028487.2011.618364
  103. Bilkovic, D.M., 2011. Response of Tidal Creek Fish Communities to Dredging and Coastal Development Pressures in a Shallow-Water Estuary. Estuaries and Coasts, 34(1): p. 129-147. http://doi.org/10.1007/s12237-010-9334-x
  104. Behringer, D.C., et al., 2011. Review of Panulirus argus virus 1-a decade after its discovery. Diseases of Aquatic Organisms, 94(2): p. 153-160. http://doi.org/10.3354/Dao02326
  105. Teixeira, H., et al., 2010. Assessing coastal benthic macrofauna community condition using best professional judgement - Developing consensus across North America and Europe. Marine Pollution Bulletin, 60(4): p. 589-600. http://doi.org/10.1016/J.Marpolbul.2009.11.005
  106. Sobocinski, K.L., J.R. Cordell, and C.A. Simenstad, 2010. Effects of Shoreline Modifications on Supratidal Macroinvertebrate Fauna on Puget Sound, Washington Beaches. Estuaries and Coasts, 33(3): p. 699-711. http://doi.org/10.1007/S12237-009-9262-9
  107. Orth, R.J., et al., 2010. Long-Term Trends in Submersed Aquatic Vegetation (SAV) in Chesapeake Bay, USA, Related to Water Quality. Estuaries and Coasts, 33(5): p. 1144-1163. http://doi.org/10.1007/S12237-010-9311-4
  108. Hoffmann, M., et al., 2010. The Impact of Conservation on the Status of the World's Vertebrates. Science, 330(6010): p. 1503-1509. http://doi.org/10.1126/Science.1194442
  109. Hilton, E.J., G.D. Johnson, and W.F. Smith-Vaniz, 2010. Osteology and Systematics of Parastromateus niger (Perciformes: Carangidae), with Comments on the Carangid Dorsal Gill-Arch Skeleton. Copeia, (2): p. 312-333. http://doi.org/10.1643/Ci-09-118
  110. Conrath, C.L. and J.A. Musick, 2010. Residency, space use and movement patterns of juvenile sandbar sharks (Carcharhinus plumbeus) within a Virginia summer nursery area. Marine and Freshwater Research, 61(2): p. 223-235. http://doi.org/10.1071/Mf09078
  111. Condon, R.H., D.K. Steinberg, and D.A. Bronk, 2010. Production of dissolved organic matter and inorganic nutrients by gelatinous zooplankton in the York River estuary, Chesapeake Bay. Journal of Plankton Research, 32(2): p. 153-170. http://doi.org/10.1093/Plankt/Fbp109
  112. Mansfield, K.L., et al., 2009. Satellite tracking reveals a dichotomy in migration strategies among juvenile loggerhead turtles in the Northwest Atlantic. Marine Biology, 156(12): p. 2555-2570. http://doi.org/10.1007/S00227-009-1279-X
  113. Finkl, C.W. and C.H. Hobbs, 2009. Mining Sand on the Continental Shelf of the Atlantic and Gulf Coasts of the US. Marine Georesources & Geotechnology, 27(3): p. 230-253. http://doi.org/10.1080/10641190902906067
  114. Brooks, R., et al., 2009. A Stream-Wetland-Riparian (SWR) index for assessing condition of aquatic ecosystems in small watersheds along the Atlantic slope of the eastern US. Environmental Monitoring and Assessment, 150(1-4): p. 101-117. http://doi.org/10.1007/S10661-008-0673-Z
  115. Aunins, A. and J.E. Olney, 2009. Migration and Spawning of American Shad in the James River, Virginia. Transactions of the American Fisheries Society, 138(6): p. 1392-1404. http://doi.org/10.1577/T08-160.1
  116. Wilber, D.H., et al., 2008. Responses of Benthic Infauna to Large-Scale Sediment Disturbance in Corpus Christi Bay, Texas. Journal of Experimental Marine Biology and Ecology, 365(1): p. 13-22. http://doi.org/10.1016/J.Jembe.2008.07.029
  117. Saba, V.S., et al., 2008. An oceanographic context for the foraging ecology of eastern Pacific leatherback turtles: Consequences of ENSO. Deep-Sea Research Part I-Oceanographic Research Papers, 55(5): p. 646-660. http://doi.org/10.1016/J.Dsr.2008.02.006
  118. Puente, A. and R.J. Diaz, 2008. Is it possible to assess the ecological status of highly stressed natural estuarine environments using macro invertebrates indices? Marine Pollution Bulletin, 56(11): p. 1880-1889. http://doi.org/10.1016/J.Marpolbul.2008.07.016
  119. Latour, R.J., et al., 2008. The trophic dynamics of summer flounder (Paralichthys dentatus) in Chesapeake Bay. Fishery Bulletin, 106(1): p. 47-57.
  120. Hoffman, J.C., D.A. Bronk, and J.E. Olney, 2008. Organic matter sources supporting lower food web production in the tidal freshwater portion of the York River estuary, Virginia. Estuaries and Coasts, 31(5): p. 898-911. http://doi.org/10.1007/S12237-008-9073-4
  121. Hobbs, C.H., C.B. Landry, and J.E. Perry, 2008. Assessing Anthropogenic and Natural Impacts on Ghost Crabs (Ocypode quadrata) at Cape Hatteras National Seashore, North Carolina. Journal of Coastal Research, 24(6): p. 1450-1458. http://doi.org/10.2112/07-0856.1
  122. Hershner, C. and K.J. Havens, 2008. Managing Invasive Aquatic Plants in a Changing System: Strategic Consideration of Ecosystem Services. Conservation Biology, 22(3): p. 544-550.
  123. Dulvy, N.K., et al., 2008. You can swim but you can't hide: the global status and conservation of oceanic pelagic sharks and rays. Aquatic Conservation-Marine and Freshwater Ecosystems, 18(5): p. 459-482. http://doi.org/10.1002/Aqc.975
  124. Duarte, C.M., et al., 2008. The charisma of coastal ecosystems: Addressing the imbalance. Estuaries and Coasts, 31(2): p. 233-238. http://doi.org/10.1007/S12237-008-9038-7
  125. Douglass, J.G., et al., 2008. Correction of statistical miscalculation slightly alters conclusions about diversity effects for Douglass et al. (2008). Ecology Letters, 11(9): p. E9-10.
  126. Douglass, J.G., J.E. Duffy, and J.F. Bruno, 2008. Herbivore and predator diversity interactively affect ecosystem properties in an experimental marine community. Ecology Letters, 11(6): p. 598-608.
  127. Diaz, R.J., et al., 2008. Long-term Trends of Benthic Habitats Related to Reduction in Wastewater Discharge to Boston Harbor. Estuaries and Coasts, 31(6): p. 1184-1197. http://doi.org/10.1007/S12237-008-9094-Z
  128. Conrath, C.L. and J.A. Musick, 2008. Investigations into depth and temperature habitat utilization and overwintering grounds of juvenile sandbar sharks, Carcharhinus plumbeus: the importance of near shore North Carolina waters. Environmental Biology of Fishes, 82(2): p. 123-131. http://doi.org/10.1007/S10641-007-9263-0
  129. Bruno, J.F., et al., 2008. Relative and interactive effects of plant and grazer richness in a benthic marine community. Ecology, 89(9): p. 2518-2528.
  130. Bromage, E., W.C. Long, and S. Kaattari, 2008. Biomarkers of oogenesis in Macoma balthica determined by subtractive immunization. Aquatic Biology, 3(2): p. 139-145. http://doi.org/10.3354/Ab00078
  131. Borja, A., et al., 2008. Assessing estuarine benthic quality conditions in Chesapeake Bay: A comparison of three indices. Ecological Indicators, 8(4): p. 395-403. http://doi.org/10.1016/J.Ecolind.2007.05.003
  132. Bilkovic, D.M. and M.M. Roggero, 2008. Effects of coastal development on nearshore estuarine nekton communities. Marine Ecology-Progress Series, 358: p. 27-39. http://doi.org/10.3354/Meps07279
  133. Rudders, D. and R. Fisher. Evolution of Gear Design to Improve the Size Selectivity of Black Sea Bass, Centropristis striata, Habitat Traps. in 137th Annual Meeting of the American Fisheries Society (AFS 2007). 2007. San Francisco, California (USA).
  134. Long, Z.T., J.F. Bruno, and J.E. Duffy, 2007. Biodiversity mediates productivity through different mechanisms at adjacent trophic levels. Ecology, 88(11): p. 2821-2829.
  135. Lawson, S.E., et al., 2007. Wind-driven sediment suspension controls light availability in a shallow coastal lagoon. Estuaries and Coasts, 30(1): p. 102-112.
  136. Horodysky, A.Z., et al., 2007. Habitat utilization and vertical movements of white marlin (Tetrapturus albidus) released from commercial and recreational fishing gears in the western North Atlantic Ocean: inferences from short duration pop-up archival satellite tags. Fisheries Oceanography, 16(3): p. 240-256.
  137. Henderson, M., M. Fabrizio, and J. Lucy. Monitoring Localized Movements and Habitat use of Summer Flounder in the Chesapeake Bay using Passive Acoustic Telemetry. in 137th Annual Meeting of the American Fisheries Society (AFS 2007). 2007. San Francisco, California (USA).
  138. Harwell, M.C. and J.M. Rhode, 2007. Effects of edge/interior and patch structure on reproduction in Zostera marina L. in Chesapeake Bay, USA. Aquatic Botany, 87(2): p. 147-154.
  139. Gillett, D.J., A.F. Holland, and D.A. Sanger, 2007. On the ecology of oligochaetes: Monthly variation of community composition and environmental characteristics in two south Carolina tidal creeks. Estuaries and Coasts, 30(2): p. 238-252.
  140. Fabrizio, M.C. and J.P. Pessutti, 2007. Long-term effects and recovery from surgical implantation of dummy transmitters in two marine fishes. Journal of Experimental Marine Biology and Ecology, 351(1-2): p. 243-254.
  141. Ellis, J.K. and J.A. Musick, 2007. Ontogenetic changes in the diet of the sandbar shark, Carcharhinus plumbeus, in lower Chesapeake Bay and Virginia (USA) coastal waters. Environmental Biology of Fishes, 80(1): p. 51-67.
  142. Duffy, J.E., et al., 2007. The functional role of biodiversity in ecosystems: incorporating trophic complexity. Ecology Letters, 10(6): p. 522-538.
  143. Bronk, D.A., et al., 2007. DON as a source of bioavailable nitrogen for phytoplankton. Biogeosciences, 4(3): p. 283-296.
  144. Tenore, K.R., et al., 2006. Characterizing the role benthos plays in large coastal seas and estuaries: A modular approach. Journal of Experimental Marine Biology and Ecology, 330(1): p. 392-402.
  145. Seitz, R.D., et al., 2006. Influence of shallow-water habitats and shoreline development on abundance, biomass, and diversity of benthic prey and predators in Chesapeake Bay. Marine Ecology-Progress Series, 326: p. 11-27.
  146. Olney, J.E., et al., 2006. Migratory behavior of American shad in the York River, Virginia, with implications for estimating in-river exploitation from tag recovery data. Transactions of the American Fisheries Society, 135(4): p. 889-896.
  147. Nichols, J.D., J.E. Perry, and D.A. DeBerry, 2006. Using a floristic quality assessment technique to evaluate plant community integrity of forested wetlands in Southeastern Virginia. Natural Areas Journal, 26(4): p. 360-369.
  148. Lin, J., et al., 2006. Dissolved oxygen stratification in two micro-tidal partially-mixed estuaries. Estuarine Coastal and Shelf Science, 70(3): p. 423-437.
  149. France, K.E. and J.E. Duffy, 2006. Consumer diversity mediates invasion dynamics at multiple trophic levels. Oikos, 113(3): p. 515-529.
  150. France, K.E. and J.E. Duffy, 2006. Diversity and dispersal interactively affect predictability of ecosystem function. Nature, 441(7097): p. 1139-1143.
  151. Duffy, J.E. and J.J. Stachowicz, 2006. Why biodiversity is important to oceanography: potential roles of genetic, species, and trophic diversity in pelagic ecosystem processes. Marine Ecology-Progress Series, 311: p. 179-189.
  152. Diaz, R.J. and J.H. Trefry, 2006. Comparison of sediment profile image data with profiles of oxygen and Eh from sediment cores. Journal of Marine Systems, 62(3-4): p. 164-172.
  153. Bruno, J.F., et al., 2006. Partitioning the effects of algal species identity and richness on benthic marine primary production. Oikos, 115(1): p. 170-178.
  154. Varnell, L.M. and C.S. Hardaway, 2005. A risk assessment approach to management of estuarine dunefields. Ocean & Coastal Management, 48(9-10): p. 767-781.
  155. McIntyre, P.B., et al., 2005. Individual- and assemblage-level effects of anthropogenic sedimentation on snails in Lake Tanganyika. Conservation Biology, 19(1): p. 171-181.
  156. Mann, R., et al., 2005. Northern quahog (hard clam) Mercenaria mercenaria abundance and habitat use in Chesapeake Bay. Journal of Shellfish Research, 24(2): p. 509-516.
  157. Gillett, D.J., A.F. Holland, and D.M. Sanger, 2005. Secondary production of a dominant oligochaete (Monopylephorus rubroniveus) in the tidal creeks of South Carolina and its relation to ecosystem characteristics. Limnology and Oceanography, 50(2): p. 566-577.
  158. Duffy, J.E., J.P. Richardson, and K.E. France, 2005. Ecosystem consequences of diversity depend on food chain length in estuarine vegetation. Ecology Letters, 8(3): p. 301-309.
  159. Bruno, J.F., et al., 2005. Effects of macroalgal species identity and richness on primary production in benthic marine communities. Ecology Letters, 8(11): p. 1165-1174.
  160. Bilkovic, D.M., et al., 2005. Evaluating nearshore communities as indicators of ecosystem health. Estuarine Indicators: p. 365-379.
  161. Ward, M.E., J.D. Shields, and C.L. Van Dover, 2004. Parasitism in species of Bathymodiolus (Bivalvia : Mytilidae) mussels from deep-sea seep and hydrothermal vents. Diseases of Aquatic Organisms, 62(1-2): p. 1-16.
  162. Holland, A.F., et al., 2004. Linkages between tidal creek ecosystems and the landscape and demographic attributes of their watersheds. Journal of Experimental Marine Biology and Ecology, 298(2): p. 151-178.
  163. Diaz, R.J., M. Solan, and R.M. Valente, 2004. A review of approaches for classifying benthic habitats and evaluating habitat quality. Journal of Environmental Management, 73(3): p. 165-181.
  164. Carlsson, J., et al., 2004. Migration of landlocked brown trout in two Scandinavian streams as revealed from trap data. Ecology of Freshwater Fish, 13(3): p. 161-167.
  165. Walter, J.F., et al., 2003. Atlantic coast feeding habits of striped bass: a synthesis supporting a coast-wide understanding of trophic biology. Fisheries Management and Ecology, 10(5): p. 349-360.
  166. Turnipseed, M., et al., 2003. Diversity in mussel beds at deep-sea hydrothermal vents and cold seeps. Ecology Letters, 6(6): p. 518-523.
  167. Duffy, J.E., 2003. Biodiversity loss, trophic skew and ecosystem functioning. Ecology Letters, 6(8): p. 680-687.
  168. Diaz, R.J., G.R. Cutter, and D.M. Dauer, 2003. A comparison of two methods for estimating the status of benthic habitat quality in the Virginia Chesapeake Bay. Journal of Experimental Marine Biology and Ecology, 285: p. 371-381.
  169. Diaz, R.J., G.R. Cutter, and K.W. Able, 2003. The importance of physical and biogenic structure to juvenile fishes on the shallow inner continental shelf. Estuaries, 26(1): p. 12-20.
  170. Conrath, C.L. and J.A. Musick, 2002. Reproductive biology of the smooth dogfish, Mustelus canis, in the northwest Atlantic Ocean. Environmental Biology of Fishes, 64(4): p. 367-377.
  171. Buzzelli, C.P., et al., 2002. Estimating the spatial extent of bottom-water hypoxia and habitat degradation in a shallow estuary. Marine Ecology-Progress Series, 230: p. 103-112.
  172. Bartholomew, A., 2002. Total cover and cover quality: predicted and actual effects on a predator's foraging success. Marine Ecology-Progress Series, 227: p. 1-9.
  173. Seitz, R.D., et al., 2001. Density-dependent predation, habitat variation, and the persistence of marine bivalve prey. Ecology, 82(9): p. 2435-2451.
  174. Parker, J.D., J.E. Duffy, and R.J. Orth, 2001. Plant species diversity and composition: experimental effects on marine epifaunal assemblages. Marine Ecology-Progress Series, 224: p. 55-67.
  175. Lipcius, R.N., W.T. Stockhausen, and D.B. Eggleston, 2001. Marine reserves for Caribbean spiny lobster: empirical evaluation and theoretical metapopulation recruitment dynamics. Marine and Freshwater Research, 52(8): p. 1589-1598.
  176. Best, E.P.H., et al., 2001. Modeling submersed macrophyte growth in relation to underwater light climate: modeling approaches and application potential. Hydrobiologia, 444(1-3): p. 43-70.
  177. Beck, M.W., et al., 2001. The identification, conservation, and management of estuarine and marine nurseries for fish and invertebrates. Bioscience, 51(8): p. 633-641.
  178. Stockhausen, W.T., R.N. Lipcius, and B.M. Hickey, 2000. Joint effects of larval dispersal, population regulation, marine reserve design, and exploitation on production and recruitment in the Caribbean spiny lobster. Bulletin of Marine Science, 66(3): p. 957-990.
  179. Newman, M.C., et al., 2000. Applying species-sensitivity distributions in ecological risk assessment: Assumptions of distribution type and sufficient numbers of species. Environmental Toxicology and Chemistry, 19(2): p. 508-515.
  180. Bartholomew, A., R.J. Diaz, and G. Cicchetti, 2000. New dimensionless indices of structural habitat complexity: predicted and actual effects on a predator's foraging success. Marine Ecology-Progress Series, 206: p. 45-58.
  181. Wagner, C.M. and H.M. Austin, 1999. Correspondence between environmental gradients and summer littoral fish assemblages in low salinity reaches of the Chesapeake Bay, USA. Marine Ecology-Progress Series, 177: p. 197-212.
  182. Gelsleichter, J., J.A. Musick, and S. Nichols, 1999. Food habits of the smooth dogfish, Mustelus canis, dusky shark, Carcharhinus obscurus, Atlantic sharpnose shark, Rhizoprionodon terraenovae, and the sand tiger, Carcharias taurus, from the northwest Atlantic Ocean. Environmental Biology of Fishes, 54(2): p. 205-217.
  183. Buzzelli, C.P., R.L. Wetzel, and M.B. Meyers, 1999. A linked physical and biological framework to assess biogeochemical dynamics in a shallow estuarine ecosystem. Estuarine Coastal and Shelf Science, 49(6): p. 829-851.
  184. Moksnes, P.O., L. Pihl, and J. van Montfrans, 1998. Predation on postlarvae and juveniles of the shore crab Carcinus maenas: importance of shelter, size and cannibalism. Marine Ecology-Progress Series, 166: p. 211-225.
  185. Eggleston, D.B., J.J. Grover, and R.N. Lipcius, 1998. Ontogenetic diet shifts in Nassau grouper: Trophic linkages and predatory impact. Bulletin of Marine Science, 63(1): p. 111-126.
  186. Cutter, G.R. and R.J. Diaz, 1998. Novel optical remote sensing and ground-truthing of benthic habitat using the Burrow-Cutter-Diaz plowing sediment profile camera system (BCD sled). Journal of Shellfish Research, 17(5): p. 1443-1444.
  187. Havens, K.J., W.I. Priest, and H. Berquist, 1997. Investigation and long-term monitoring of Phragmites australis within Virginia's constructed wetland sites. Environmental Management, 21(4): p. 599-605.
  188. Eggleston, D.B., R.N. Lipcius, and J.J. Grover, 1997. Predator and shelter-size effects on coral reef fish and spiny lobster prey. Marine Ecology-Progress Series, 149(1-3): p. 43-59.
  189. Orth, R.J., et al. Interactions between benthic infauna and the transport and burial of Zostera marina seeds. in International Workshop on Seagrass Biology. 1996.    .
  190. Fishman, J.R. and R.J. Orth, 1996. Effects of predation on Zostera marina L seed abundance. Journal of Experimental Marine Biology and Ecology, 198(1): p. 11-26.
  191. Bonsdorff, E., et al., 1996. Characterization of soft-bottom benthic habitats of the Aland islands, northern Baltic sea. Marine Ecology-Progress Series, 142(1-3): p. 235-245.
  192. Varnell, L.M., K.J. Havens, and C. Hershner, 1995. Daily Variability in Abundance and Population Characteristics of Tidal Salt-Marsh Fauna. Estuaries, 18(2): p. 326-334.
  193. Varnell, L.M. and F.J. Havens, 1995. A Comparison of Dimension-Adjusted Catch Data Methods for Assessment of Fish and Crab Abundance in Intertidal Salt Marshes. Estuaries, 18(2): p. 319-325.
  194. Teixeira, R.L. and J.A. Musick, 1995. Trophic Ecology of 2 Congeneric Pipefishes (Syngnathidae) of the Lower York River, Virginia. Environmental Biology of Fishes, 43(3): p. 295-309.
  195. Havens, K.J., L.M. Varnell, and J.G. Bradshaw, 1995. An Assessment of Ecological Conditions in a Constructed Tidal Marsh and 2 Natural Reference Tidal Marshes in Coastal Virginia. Ecological Engineering, 4(2): p. 117-141.
  196. Mintz, J.D., et al., 1994. Survival of Juvenile Caribbean Spiny Lobster - Effects of Shelter Size, Geographic Location and Conspecific Abundance. Marine Ecology-Progress Series, 112(3): p. 255-266.
  197. Isaksson, I., L. Pihl, and J. Vanmontfrans, 1994. Eutrophication-Related Changes in Macrovegetation and Foraging of Young Cod (Gadus morhua L) - a Mesocosm Experiment. Journal of Experimental Marine Biology and Ecology, 177(2): p. 203-217.
  198. Lohse, D.P., 1993. The Effects of Substratum Type on the Population-Dynamics of 3 Common Intertidal Animals. Journal of Experimental Marine Biology and Ecology, 173(1): p. 133-154.
  199. Eggleston, D.B. and R.N. Lipcius, 1992. Shelter Selection by Spiny Lobster under Variable Predation Risk, Social Conditions, and Shelter Size. Ecology, 73(3): p. 992-1011.
  200. Thoney, D.A., 1991. Population Dynamics and Community Analysis of the Parasite Fauna of Juvenile Spot, Leiostomus xanthurus (Lacepede), and Atlantic Croaker, Micropogonias undulatus (Linnaeus), (Sciaenidae) in 2 Estuaries Along the Middle Atlantic Coast of the United-States. Journal of Fish Biology, 39(4): p. 515-534.
  201. Crabtree, R.E., J. Carter, and J.A. Musick, 1991. The Comparative Feeding Ecology of Temperate and Tropical Deep-Sea Fishes from the Western North-Atlantic. Deep-Sea Research Part a-Oceanographic Research Papers, 38(10): p. 1277-1298.